On a non Bose/Chorus 2 (CD Changer + Cassette in my case), the rear speakers are driven from an amplifier under the rear seat. The 12 volts supply to the amp, and the audio signals get there via the CD Changer cable, that plugs into the Chorus, (LR, RR, 12V & COM, you can see them on the label photo shown in previous replys).
I just fitted a Bluetooth adapter to my Chorus, and initially had the same problem, no rear speaker output, which I eventually worked out, was down to the fact that I had not correctly fitted the adapter cable from the CD Changer cable loom to the CD Changer connector on the Chorus, hence the outputs from the Chorus never got to the rear amp etc.
The same situation will arise when an aftermarket head unit is fitted, unless you fit an adapter cable between the CD Changer loom and an output on the new head unit that will provide left and right speaker outputs signals, +12V and GND, suitable for the under seat amp. These must be specifically for the rear speakers in order that the head unit Front/Rear Fader works.
Failing such an output on your new head unit, you'd have to run new cables and power the speakers direct from the head unit rear speaker output, by-passing the amp. If you retain the amp, it'll need +12V and GND (COM), which you'd have to pick up from the head unit supply. The amp can only handle low signal levels, not speaker power outputs. High input levels will kill the amp.
Hope this helps someone, as it took me hours to work out last week!