Learned something important when scanning my vehicle - don't run prolonged scans (longer than 30-minutes) unless the engine is running or you have a trickle charger running.
If you remain connected and spend any amount of time going through all the menus or playing with all the options, you'll discover just how quickly you can drain the battery if the car isn't running. If you check the very bottom of the Auto-Scan report (.txt file), you will see a final "end" message that looks something like this:
End----(Elapsed Time: 01:27, VBatt start/end: 11.8V/11.6V. VIgn 11.6V)-----
On older TTs with less than stellar batteries, this can lead to a condition where the voltage is so low, the car won't start and you'll trigger a host of new error messages. The tell tail sign that your battery is dead is the rear spoiler will automatically deploy, most of the yellow warning dash lights will come on. As was my case, the last test I ran showed a significant drop in voltage from just 24-hours before:
End-----(Elapsed Time: 01:30, VBatt start/end: 9.8V/9.2V. VIgn 9.2V)-------
As was pointed out to me by TT-driver, it's possible that after going through an Auto-Scan or spending time browsing the menus, one or more of the controllers can remain "on" even after the VCDS program is turned off, the HEX-V2 cable disconnected and the car shut down, closed and locked.
To determine if this is the case, check to see if the emergency flasher switch is still illuminated 15-20 minutes after the VCDS testing has been completed. If it remains illuminated, this indicates a module may still be "on" and the battery is being run down.
To prevent this, it was recommended that you always end the testing in the reverse order of starting it...
Starting a VCDS scan -
1.) Power up laptop
2.) Connect cable
3.) Ignition on
4.) Start VCDS.
To be on the safe side, it doesn't hurt to start and stop the engine after completing a VCDS scan just to be sure all the modules go back to sleep before you close and lock the vehicle. In some cases, if some of the light stay on, a quick trip around the block will often reset them.